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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10081813_10081958_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10081813 - 10081958
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGCTCTTTGAAG
Flanking Amino Acid:
GAIKVSREGQSYRFTILCHM
Intron Amino Acid Position:
965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.1
0.54
1
75.3
33.4
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
58
0.11
1.5
60.1
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946