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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10082087_10082685_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10082087 - 10082685
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
GCTTTCACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTGGCTTTCACA
Flanking Amino Acid:
TTSLLVHNSTGSGIEDFIHT
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.1
40.8
Major BPS
84.6
0.86
1
74
41.2
Major PPT
68.3
0.41
1
60.4
40.3
Minor 5ss
22.7
-3.1
3.2
19.9
37.9
Minor BPS
58
0.25
1.9
70.38
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946