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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10088489_10088608_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10088489 - 10088608
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGC
5'SS Class:
major
3'SS Sequence:
TCCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTGTCCTTTATT
Flanking Amino Acid:
PFAFNAGIAKVFHLEKYGIG
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
64.8
41.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
86.4
0.82
0.7
84.7
28.5
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
74.6
0.86
1.6
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946