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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10089304_10089623_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10089304 - 10089623
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TAAACAGCAAAG
Flanking Amino Acid:
KTMGLQDIAFWLSWSLLYAV
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.1
0.66
0.8
69.9
35.5
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
36.6
-1.1
2.2
41.73
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946