About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10091176_10091534_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10091176 - 10091534
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAACTT
5'SS Class:
major
3'SS Sequence:
TTGCAAACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCTTCTTGCAAA
Flanking Amino Acid:
NAVALKSVMTGIKLEAMDSE
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
70.5
39.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
63.4
0.3
1
55.3
38.9
Minor 5ss
43.3
-0.7
3.3
65.1
46.1
Minor BPS
48.5
-0.1
2
65.08
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946