About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10096483_10096648_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10096483 - 10096648
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGCTACC
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TACACTGTGATG
Flanking Amino Acid:
RLFPHAARQERIYSLLSYKI
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.2
0.19
1.5
62.7
40.3
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
36.6
-1.5
2.8
47
41.3
Minor BPS
44
-0.6
2
47.14
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016523
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019616
10096242 - 10101858
5617