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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10099182_10099913_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10099182 - 10099913
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAACAA
U12 Branch Point Sequence:
CCCCCCGTGACT
Flanking Amino Acid:
SGDMAVTAGEVLLQGCEATA
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
48.1
-0.1
0.9
53.4
30.8
Major PPT
71.6
0.49
1
65.7
40.9
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
48.6
-0
2.1
64.08
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016523
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019616
10096242 - 10101858
5617