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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10100006_10100292_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10100006 - 10100292
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCTAATA
5'SS Class:
major
3'SS Sequence:
ATATTTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATCATTAACT
Flanking Amino Acid:
VRNLSFSVKKGEVLGLLGPN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
65.9
39.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.4
0.64
1
69.9
45.1
Minor 5ss
32.4
-2
3
41.6
44.4
Minor BPS
74.6
0.85
1.6
86.33
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016523
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019616
10096242 - 10101858
5617