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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10114103_10114823_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10114103 - 10114823
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCCG
5'SS Class:
major
3'SS Sequence:
CCTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAG
U12 Branch Point Sequence:
ACAGAGGCAACA
Flanking Amino Acid:
KAMGLQDLAFWLSWSLLYTI
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
58.9
45.6
Major BPS
47
-0.1
1.5
46.7
38.9
Major PPT
85.5
0.8
0.7
80
25.3
Minor 5ss
38.3
-1.3
3
46
43.1
Minor BPS
31.7
-1.3
2.4
39.38
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017558
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046557
10113715 - 10117458
3744