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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10115997_10116376_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10115997 - 10116376
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
AAATGCTTCATT
Flanking Amino Acid:
VSPNEAFEHIDTCSNYSSKF
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72
39.5
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
84.6
0.78
0.7
80.2
25.4
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
48.9
-0
2.1
68.29
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017558
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046557
10113715 - 10117458
3744