About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10116869_10117362_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10116869 - 10117362
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCATCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TCACCTTTATTT
Flanking Amino Acid:
VWRKKTETFQEWITCAVFLL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96.8
6.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
69.3
0.43
0.8
61.3
34.7
Minor 5ss
26.9
-2.6
4.1
42.9
44.7
Minor BPS
56.6
0.29
1.6
69.81
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017558
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046557
10113715 - 10117458
3744