Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10126350_10126610_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10126350 - 10126610

Intron Length:

261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTAAG

5'SS Class:

strong_major

3'SS Sequence:

ATTCTTTTAACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTAAAT

U12 Branch Point Sequence:

TTCTCTTGAATT

Flanking Amino Acid:

LSHCFSKLEEVKHTFSIEEY

Intron Amino Acid Position:

1595

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

1.1

77.9

38.6

Major BPS

0.5

1.1

76.9

32.8

Major PPT

81.1

0.7

0.9

77.4

Minor 5ss

40.6

-1

2.6

50.6

45.9

Minor BPS

0.77

1.3

84.4

36.8

Associated Gene:

Gene:

ABCA5

Ensembl Gene ID:

ENSAPLG00000006114

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006428

10125502 - 10152097

26596