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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1012662_1014543_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1012662 - 1014543
Intron Length:
1882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAACATC
5'SS Class:
major
3'SS Sequence:
CTGTCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATGAT
U12 Branch Point Sequence:
CTCACCATGATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
69.5
41.5
Major BPS
59.7
0.24
1.2
51.3
42.7
Major PPT
74.8
0.56
0.8
68.7
31.8
Minor 5ss
42.9
-0.8
3
52.3
44.8
Minor BPS
47.8
-0.3
1.8
51.89
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003696
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003783
987601 - 1094465
106865