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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10129555_10129705_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10129555 - 10129705
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCCT
5'SS Class:
major
3'SS Sequence:
TGTACTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATATTATCGACT
Flanking Amino Acid:
VGEVEPTSGQVLMGDYYSGV
Intron Amino Acid Position:
1363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
70.4
39.7
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
79.8
0.67
0.9
73.6
36.8
Minor 5ss
42.3
-0.9
2.9
59.8
44.7
Minor BPS
49.6
0.05
1.8
71.44
39

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596