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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10130286_10130967_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10130286 - 10130967
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGGAAT
U12 Branch Point Sequence:
TTTTCTTCCCCT
Flanking Amino Acid:
GRTIREDPFFRKCFTKVKTW
Intron Amino Acid Position:
1250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
80.1
28.5
Major BPS
48.7
-0
1.5
57.6
45.8
Major PPT
78.8
0.65
0.7
78
24
Minor 5ss
45.4
-0.5
2.7
60.6
44.5
Minor BPS
42.2
-0.5
3.7
79.65
42.8

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596