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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10132191_10132438_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10132191 - 10132438
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
ATTGAATGAAAA
Flanking Amino Acid:
KEFWSFIFSVAALLCTVVTE
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
79.5
0.66
0.9
76.5
37.7
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
44.2
-0.4
2
58.77
39.9

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596