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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10132553_10133509_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10132553 - 10133509
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCATAC
U12 Branch Point Sequence:
GCTTCCTGAGAA
Flanking Amino Acid:
YFYVGKFMAVLFCLIGYVPS
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
64.3
0.36
1
61
37.1
Major PPT
83
0.74
0.8
77.2
31.6
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
50.1
-0
1.8
62.75
42.8

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596