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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10134154_10134311_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10134154 - 10134311
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
ATGTATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TATTATTGAAGA
Flanking Amino Acid:
IQIWSNPFIQDLPDTVFKLE
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
75.1
0.56
1
71.1
43.3
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
50
-0
1.9
66.47
39.6

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596