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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10134450_10135546_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10134450 - 10135546
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GACTAATTAATG
Flanking Amino Acid:
LNVFDLESRQNYVFTIVFNS
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
67.7
39.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.1
0.86
0.7
80.4
31.6
Minor 5ss
25.9
-2.8
2.9
29.3
43.4
Minor BPS
48.3
-0.2
1.8
51.77
42.3

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596