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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10139877_10140060_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10139877 - 10140060
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCTTT
5'SS Class:
weak_major
3'SS Sequence:
TGTTTCTTGATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTTTCTTGATA
Flanking Amino Acid:
KTKWGIGYRLSMHIDAYCNT
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
73.3
38.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
75.5
0.57
1
72.9
37.5
Minor 5ss
70.8
0.7
2.2
82.3
37.4
Minor BPS
74.5
0.77
1.1
78.41
31.5

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596