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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10144491_10145339_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10144491 - 10145339
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTTCCTGTATT
Flanking Amino Acid:
VAVYLDQVIPGEFGLRRSSF
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
65.5
0.35
1
58.5
41.9
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
68.6
0.67
1.8
89.01
35.5

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596