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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10146654_10148133_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10146654 - 10148133
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
CTTTTGCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
TGTTCCTTTTTT
Flanking Amino Acid:
KILGLHDAAFWLSWVLLYTS
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.7
38.7
Major BPS
69.9
0.5
1
73
31.5
Major PPT
82.1
0.72
0.8
77.3
31.5
Minor 5ss
38.3
-1.3
3.1
45
44.5
Minor BPS
46.2
-0.2
3.6
80.7
41.2

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596