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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1014667_1016381_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1014667 - 1016381
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
GCTGTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CCTGCTGTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
71.8
0.49
1
66.9
42.9
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
48.7
-0
2.1
66.31
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003696
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003783
987601 - 1094465
106865
Gene:
Ensembl Gene ID:
ENSAPLG00000024109
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019594
1014557 - 1020895
6339