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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10149161_10150296_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10149161 - 10150296
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTCGGA
5'SS Class:
weak_major
3'SS Sequence:
TTCCACCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
ATTTCTTCCACC
Flanking Amino Acid:
RKVAFDNFEDGIITEEYLSE
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.2
47.6
43
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
75.2
0.57
0.8
68.4
31.6
Minor 5ss
35.2
-1.7
3.5
46.4
48.8
Minor BPS
56.7
0.19
2
72.85
38.3

Associated Gene:

Gene:
ABCA5
Ensembl Gene ID:
ENSAPLG00000006114
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006428
10125502 - 10152097
26596