About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10200280_10203658_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10200280 - 10203658
Intron Length:
3379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
KERPTYPELMQHPFFTLHES
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
82.6
0.73
0.7
76.7
32
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
MAP2K6
Ensembl Gene ID:
ENSAPLG00000005826
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006066
10166185 - 10203774
37590