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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1024831_1027135_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1024831 - 1027135
Intron Length:
2305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACCATAGTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.3
0.82
0.8
77.7
36.7
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
51.6
0.13
1.9
73.74
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003696
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003783
987601 - 1094465
106865