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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10284389_10284748_F

Intron Information:

Intron Rank:
127886
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
10284389 - 10284748
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGGAAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
57.3
0.17
1.2
51.7
46.2
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018922
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025676
10284257 - 10289419
5163