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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10284839_10289154_F

Intron Information:

Intron Rank:
127887
Intron Class:
major
Intron Phase:
Intron Coordinates:
10284839 - 10289154
Intron Length:
4316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AGCTCTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.3
0.86
0.7
80.5
36.7
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
65.5
0.48
1.4
67.73
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018922
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025676
10284257 - 10289419
5163