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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10353912_10353992_F

Intron Information:

Intron Rank:
123428
Intron Class:
major
Intron Phase:
Intron Coordinates:
10353912 - 10353992
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATGTT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.6
35.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
37.5
-1.4
3.5
49.3
47
Minor BPS
72
0.67
1.5
80.35
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016575
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032794
10353819 - 10384108
30290
ENSAPLT00000025068
10353819 - 10372882
19064