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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10354063_10366125_F

Intron Information:

Intron Rank:
123429
Intron Class:
major
Intron Phase:
Intron Coordinates:
10354063 - 10366125
Intron Length:
12063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCGTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TGCGCCTAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
75.2
0.57
0.9
72.4
37.7
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
49.7
-0
1.9
61
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016575
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031177
10353405 - 10384108
30704
ENSAPLT00000025068
10353819 - 10372882
19064
ENSAPLT00000032794
10353819 - 10384108
30290