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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1055961_1072678_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1055961 - 1072678
Intron Length:
16718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
GACTGATGAAGC
Flanking Amino Acid:
AKEGHWVILQNIHLVAKWLS
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
70.6
42.2
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
72.7
0.51
1
66.2
40.7
Minor 5ss
37.4
-1.4
3.5
56
48.2
Minor BPS
39.6
-0.8
2.2
46.37
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003696
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003783
987601 - 1094465
106865