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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10704026_10726501_F

Intron Information:

Intron Rank:
149771
Intron Class:
major
Intron Phase:
Intron Coordinates:
10704026 - 10726501
Intron Length:
22476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.3
38
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.9
0.85
0.8
86
32.7
Minor 5ss
35.6
-1.6
3.5
47.4
48.2
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030586
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040866
10703449 - 10756945
53497
ENSAPLT00000039913
10703449 - 10761756
58308