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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10768455_10775945_R

Intron Information:

Intron Rank:
155544
Intron Class:
major
Intron Phase:
Intron Coordinates:
10768455 - 10775945
Intron Length:
7491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
62
39.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
90.2
0.9
0.6
87.8
22.4
Minor 5ss
40
-1.1
3
50.7
45.6
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031182
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046072
10768378 - 10776662
8285