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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10776062_10776539_R

Intron Information:

Intron Rank:
155545
Intron Class:
major
Intron Phase:
Intron Coordinates:
10776062 - 10776539
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTCTA
5'SS Class:
major
3'SS Sequence:
TGACCTCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTCCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.7
41.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
67.2
0.39
1
59.3
41.5
Minor 5ss
36.5
-1.5
3.3
46.1
44.4
Minor BPS
71.5
0.75
1.4
82.63
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031182
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046072
10768378 - 10776662
8285