About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10780318_10780710_R

Intron Information:

Intron Rank:
144598
Intron Class:
major
Intron Phase:
Intron Coordinates:
10780318 - 10780710
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
GATGCTATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
86.3
0.82
0.6
85.1
22.4
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
58.4
0.34
1.7
74.93
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025137
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044708
10779809 - 10795125
15317
ENSAPLT00000035101
10779809 - 10781380
1572