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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1080457_1087232_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1080457 - 1087232
Intron Length:
6776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CCTCTCTTACTC
Flanking Amino Acid:
SLKELDLGLKGELTMTSDME
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
77.3
0.62
0.8
76.5
31
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
51.5
0.03
1.6
58.43
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003696
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003783
987601 - 1094465
106865