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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10808858_10809705_R

Intron Information:

Intron Rank:
151041
Intron Class:
major
Intron Phase:
Intron Coordinates:
10808858 - 10809705
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAC
U12 Branch Point Sequence:
AGTCACAGGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
58.3
0.21
1.1
61.1
36.4
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
41.2
-0.7
1.7
50.11
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028763
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046494
10808095 - 10810425
2331