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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1087623_1094237_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1087623 - 1094237
Intron Length:
6615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
GGCAATCTAACT
Flanking Amino Acid:
FMEGARWDAQAGIITDARLK
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
85.2
0.79
0.6
80.9
24.2
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
45.8
-0.2
1.8
60.22
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003696
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003783
987601 - 1094465
106865