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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10893530_10893813_R

Intron Information:

Intron Rank:
147916
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
10893530 - 10893813
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CATCTAAAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTTCCTCTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
54.5
0.1
1
49.3
37
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
54.1
-0
2
63.55
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026869
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047187
10893434 - 10909467
16034