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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10894539_10895432_R

Intron Information:

Intron Rank:
147917
Intron Class:
major
Intron Phase:
Intron Coordinates:
10894539 - 10895432
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGGCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATGGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
70.3
0.46
0.9
64.8
36.5
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
49.3
-0
1.9
66.87
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026869
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047187
10893434 - 10909467
16034