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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10951416_10958958_R

Intron Information:

Intron Rank:
153118
Intron Class:
major
Intron Phase:
Intron Coordinates:
10951416 - 10958958
Intron Length:
7543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTATTATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
53.2
0.18
1.6
75.8
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029944
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023429
10951313 - 10959679
8367