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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10981243_10981421_R

Intron Information:

Intron Rank:
154702
Intron Class:
major
Intron Phase:
Intron Coordinates:
10981243 - 10981421
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.5
0.75
0.7
82
28.7
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
69.5
0.69
1.6
83.97
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030812
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030360
10979700 - 10981533
1834