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Intron Name: Anas_platyrhynchos_platyrhynchos_19_11081897_11082924_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11081897 - 11082924

Intron Length:

1028

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TGTGCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAC

U12 Branch Point Sequence:

ACCAGCTGACTC

Flanking Amino Acid:

ELSKTLGKLWRLLNESEKRP

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

74.9

35.3

Major BPS

57.5

0.19

1.1

48.8

38.1

Major PPT

71.6

0.49

0.9

62.2

39.8

Minor 5ss

27.6

-2.6

32.2

42.5

Minor BPS

39.3

-0.8

1.9

41.59

39.3

Associated Gene:

Gene:

SOX9

Ensembl Gene ID:

ENSAPLG00000013168

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013709

11080783 - 11084541

3759