Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11092399_11093132_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11092399 - 11093132

Intron Length:

734

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTTTGGGAA

5'SS Class:

weak_major

3'SS Sequence:

GCACTGTGCTGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTCCAC

U12 Branch Point Sequence:

GGTGTCTCCACG

Flanking Amino Acid:

KIHPSKINHDTPRWMAPART

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.1

1.2

48.1

Major BPS

54.8

0.12

1.3

66.4

39.9

Major PPT

45.4

-0.2

1.7

49.2

43.6

Minor 5ss

33.2

-1.9

3.4

43.8

44.9

Minor BPS

43.6

-0.6

2.1

48.54

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023487

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042749

11090694 - 11093244

2551