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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11199747_11200111_R

Intron Information:

Intron Rank:
145198
Intron Class:
major
Intron Phase:
Intron Coordinates:
11199747 - 11200111
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCACAA
U12 Branch Point Sequence:
CAGCCCACAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
47.4
-0.1
1
52.5
32.6
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
41.3
-0.6
2
46.35
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025546
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041874
11199713 - 11200981
1269