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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11289120_11294249_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11289120 - 11294249
Intron Length:
5130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GGGCTCTCACCT
Flanking Amino Acid:
LDGSLGFAAGVMLAASYWSL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
39.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
83.7
0.76
0.7
77.7
31.1
Minor 5ss
34.6
-1.7
2.7
33.4
41.6
Minor BPS
45.8
-0.2
1.8
58.99
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014368
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014964
11249892 - 11295017
45126