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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11294289_11294909_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11294289 - 11294909
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CCTCACTAAGCG
Flanking Amino Acid:
ALVFVFSSGQRRILDGSLGF
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
81.3
0.7
0.8
72.7
37.5
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
42.2
-0.7
2
45.43
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014368
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014964
11249892 - 11295017
45126