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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1130975_1312047_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
1130975 - 1312047
Intron Length:
181073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACAGTGG
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.2
45.7
44.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
34
-1.8
3.5
37.8
47
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003691
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003768
1122516 - 1312143
189628