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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11316972_11317076_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11316972 - 11317076
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
CACCTCTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
ATTTCTTCCACC
Flanking Amino Acid:
NILPLASSQIRFGLLPLSMS
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.8
76.2
39.9
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
67.9
0.4
1
70.9
33.3
Minor 5ss
34.6
-1.8
2.9
44.7
43.1
Minor BPS
56.7
0.19
2
72.85
38.3

Associated Gene:

Gene:
COG1
Ensembl Gene ID:
ENSAPLG00000014310
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014925
11313528 - 11318645
5118