About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11321582_11325556_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11321582 - 11325556
Intron Length:
3975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTACCTTGATT
Flanking Amino Acid:
TVLQDSWDTEKVAVTKNIKE
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.5
0.66
0.9
72.8
36.4
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
80.6
1.04
1.1
92.09
30.2

Associated Gene:

Gene:
FAM104B
Ensembl Gene ID:
ENSAPLG00000014303
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014900
11319639 - 11326653
7015